1. 中山大学化学学院
2. ,安徽,合肥,230026
3. 中山大学生物医学工程学院
4. 南方医科大学药学院
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郑旭玲, 殷文, 陈俊, 等. 基于DNA “Y”型结构的指数型核酸恒温扩增策略检测microRNA[J]. 分析测试学报, 2021,40(6):920-927.
Detection of MicroRNA Using an Exponential Nucleic Acid Isothermal Amplification Strategy Based on a DNA “Y” Structure[J]. 2021,40(6):920-927.
该文基于“Y”型DNA模板和恒温指数扩增反应(EXPAR)技术的信号放大功能,建立了一种快速低序列依赖性的miRNA检测方法(Y-EXPAR)。以let-7b为检测目标,设计两条部分互补的DNA模板,与目标miRNA共同构成“Y”型结构,能够同时进行双向扩增,反应效率高,反应时间短,并降低了放大性能对模板序列的依赖。方法检出限低至0.3 amol/L(相当于10 μL溶液中有1.8拷贝的let-7b),并能区分单碱基差异的let-7家族同源序列。应用于肿瘤细胞裂解液let-7b的检测,POI值与细胞数目对数值呈线性关系,说明Y-EXPAR在实际样品miRNA的检测中具有优势。得益于扩增的高特异性、抗干扰性和低序列依赖性,该方法为miRNA的快速检测提供了新思路,在miRNA相关的疾病研究和临床诊断方面具有良好应用前景。
A rapid and low sequence-dependent miRNA detection method was established based on a “Y” DNA structure and a signal amplification function of isothermal exponential amplification reaction(EXPAR),which was named as Y-EXPAR.This method is easy to operate,with no need for DNA template labeling and a temperature change process.Meanwhile,the miRNA analysis was combined with fluorescence analysis technology,with Let-7b as a model target for miRNA detection because of its important role in cellular processes and human disease.According to the sequence of the model miRNA,two partially complementary DNA templates were designed to form a “Y” shaped structure together with the target miRNA,which could mediate a bidirectional amplification resulting in high efficiency and a short reaction time of 10 min.Furthermore,the results generated a good anti-interference for homologous sequences,distinguishing the let-7b from the let-7 homologous sequences with differences of 1-4 bases.Next,when used to detect other miRNAs with a lot of sequence changes(GC content),this “Y” template could also keep a good amplification performance,achieving the reduce of the dependence of amplification performance on template sequence.To achieve the best amplification efficiency,the reaction temperature,the dosage of endonuclease and polymerase were optimized.Under the optimal experimental conditions that the reaction temperature was 45 ℃,the concentration of Nt.BstNBI endonuclase was 0.04 U/μL,and the concentration of Vent(exo-) DNA polymerase was 0.06 U/μL,this method obtained a limit of detection down to 0.3 amol/L(corresponding to 1.8 copies of let-7b per 10 μL).And the linearity was maintained well within the range of 10 concentration orders.Results of the application in let-7b detection of tumor cell lysate showed a distinct difference between the POI values of 1-1 000 cells and the blank sample.And there was a linear relationship between the POI value and the logarithmic value of the number of cells.These results indicate that Y-EXPAR has an advantage in the detection of miRNA in actual samples.Benefited from the high efficiency,specificity,anti-interference and low sequence dependence of the amplification,this method provides a new idea for the rapid nucleic acid constant temperature amplification,and has a good application prospect in the research and clinical diagnosis of miRNA-related diseases.
miRNA恒温指数扩增反应(EXPAR)序列依赖性疾病诊断
miRNAisothermal exponential amplification reaction(EXPAR)sequence dependentdisease diagnosis
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